GgaINT0047766 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37169934-37174971:+
Coord C1 exon
chr7:37169934-37170057
Coord A exon
chr7:37170058-37174530
Coord C2 exon
chr7:37174531-37174971
Length
4473 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CGCCGCTTTCCTCCCCGCAGATC
3' ss Score
13.74
Exon sequences
Seq C1 exon
TCTCCTTCTCATAAAACAAAGAGGCAGCAGCAGGAGCTAATTGCAGAGCTCAGGAGGCGGCAGGTCAAGGATAACAGGCATGTGTACGAAGGGAAGGATGGTGCTATTGAAGATATTATAACAG
Seq A exon
GTAAAGCCCTTTTGTTCCATAACCTCAGAGGCCCTTTCACGAAGGTTAAAAATGTGTATCTGCCTAATAGCTATTGTTTGTGCGTTATGTGATTCTTGTAGAGCTGCTGGAGCACAGCGTAGGAGATTGTTTACATGATGTGAATCAATTATAGAAGGCTTTGCTAAGGGAACAGACAAAGCCCAGTAACCTCCTTTTGCGTGTTCACTGTCAGTGCTGCCCGTGTTTGTCGCAAGCACAGACCTTGGGCACGTGCTGTTTCTGACCTCTTCTCTTTCAGCATGTTGGGACATACTTGGTCTCTGATCTCTAGAGTAGGCAGCTCAGATCTCAGCAGATATTTGGTGGGGATGTGCATGCCGTGCAGATCTTTCCCAGAAATCTTTACTTTCCCATAACTGGAATGAATGACAGATGTTTAACATTATTAAGAGCCTGCGTTTTCATTAAAATGTACTAGCAGTAATTGCACCACAGTATCACACACTTACAGGAAACCATTTAGTCAAACCTGAATGATGGATGGCCCTAAGCAGCTTCTGGTTTCACTGCTTTTCAGTTTGGCAGAAGTCTGCCCTGATCACCACTGTAGGGCTGCAGGGAGGGGTGCAGAACCCACTGTCAGTGCTAGAGAAGCAGGGACGTTGTGTGCTGCTAAAGCTGTCTTCTGAGTCGTGCTGTGCTCAGCAGTCAGCTCCTTTTGCCACTGCTCTGGTTGCAGTGCCTGGATTTTAGTGCGTGTCTTCACCTGTGATGTGGAAGGAGCAAGGCACTTTGATAGCTGTACAGTAATAGAGTTCTGTTGCACAGAAAGTCAACAAAACAATCTTTGGGCAGGATGGCCTTGGCTGCTTCTCCCAAATGTTTGTCATATTGTTTCTTCCCTCTGGGAGGAGGAGGAGAGCTGCTTTACCTCTCAGTGAGGAATTTTTGCCCAGCTACATGAGAGGGTTGGAATGCTCTTGGAGAAGCTTTCACAACTCTTTCTAACGTTTGATTAAGAGATTCCTAAGATAATATTCTCCATGTAAGAGGCAGACTTGCTGTAATACCTAATCACTTCTGCGTCTGCATCTCCTTTGGGCTCCTGGAAGCTGGTGTAGTTAGTGAAGTGGCTCTCCTGCTCTGTGGGAGAAACAGATGGTGCAAATGATGCCAGCCTGCTTGCAGCCCTGTGCCAGTGTGCCAGGCTCAGTCAACCTGACCATCCCCTGTGGTGCCCAGCCCTTCCAGCTATGGGGTGCCCCGGGGCCTCGGGCCATGCAGTAACACATGAGGCACAGAATGTCAGGTTGAACTGAGGTCACTTGGATGCAGCCTGTGACAGCTCGTGCAGTGGCATGGAAATAATCAGAGGTGTCACTTGACACTGGCTAGTGCCTGGTCAGGTGTGTGGGGAGGCCCTGCTGGCTGGGACAGGATGGGATGCCGTCTGAAGCCATGCTCTTCCGAGCCATAGCCTTAACCTTTAGCAACAGCCTTTCAAAGCCAGAAACAGATAGGTAGTGACTTAAAACTGCCTCCTTACCAAATCCTCCTGCACTGCAGTGTCATGAGTTGGTTGGAACGTGCATAGCTGTTCCCGGTTGTCCTTAACCACGCGCTAACCGTGTACTAATGCCATCGATCTGTGCTTCTCACTGCTCTGTTTGTTTGGCTGTTATTCCCATGCAGTGCTGAAGACTGTGCCCTTTACAGCTCGAACCGCCAAGCGGGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAGGAATTCCATTACTAAACTATTCCTCTTTCACATCTGATGCTCTTAGACAAAAAAAGGTTGCTGTAGATTTTTTGACACTTCTCCATTTGTACGGACCTCAGCCAGGATGGTGTGAATGTTGAGTGTTTAGCAGTGTCCGGCGTCCGTCTGAAGTCGTATCGATGTCACCTTCGTTGCATGCGTTGTGTTTCAGTAACGTTTTATTTCATCCCATCGAATTTGTGTTGGATGCTTTTGGCCATCCTCGCGTTTCAGAGGCATTGCTAACCCTCGTGACAAGTGCCATAGAACAGCAAGTGGTGGAAGTCACAGTAGATTCGGTGCCGGCTCCATGGGACGGACAAGGCTTAGGCCGAACACAGTCGTACTGTGACAGTTCACTTGGCTTTTCTATGTCATCTCTGCTGGCTGCAGATCTTTCTCTGTATTCAAATGTACCTGAATAGTCTGCATGTAATAACTGAGCTGTAAGCCAGAGGGAACTGTCTGCATGGCTTTGGTGGGACCTCCTTGGGCTTTGCTTTCTGGTCTGGAAGGGTTATCTGTGGTAACGTGTCCCTTCTGTGAGGAGCATCGTTTCGGCCTGTCTAACCTGCATGCTTGCATGTCAGACACAGAACAGAATCCATCTTCTCTCATTTGTTCACATCCACGTTTAACTTCTTCAGTTCCATGCCAACTTTTATCGAAATAAAACCAGCAGCGTTAATTGAGCATTAACCAATTCTCATGGAGGCCGGCGAGGTGCCGTGGGCTTTGTGACAGCGTGGGGTGAGAGCTGGGGGGGTGGGAGGCAGCAGGGCTGGGCTGTGCCAGCCCACAGCTATGGGCGCGGGGCAGAGCTTGGCATGGAACTGAGCACCGTACATCCTGTGGTGTGCAGTGTCAGGAGGGTGTGCTTAACCCCGCATGTCTCTTAACACTGTTGTCTTGAATTAAGGACGGATGGCTTAAGAAGACAACAGTGTTCATTTAGCAATATGTATTTTTATGAATGCTTCTAATAAAATTGCAAACTATAATCAGCTCAACGGTTATTTGCTCTTTCGAGTTAATTGCTGTATTATCTTCCTGGAGCCAATCTTCAAAGCAGCTTGGACTTTGGTTAGCGAGAGGGAAGGGTGGCCCTGTGTCCTTTCCTCTCCTCCTCTAACTTCTCATGGCCTCAGCCTCACCCCTCCTTTCGCTCTGCTGGCTAACACGCCTGCCATTTGTGAACGCTGAGTTGACTTGCTCTCCATTTTCCATCCCATTTTTTACTTAACCATCATTTTTTTTTTTTTTCTGTTTAGCCCTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTGGCAAGCATCACTTTTTACTTAGCTTCCTCCTCTCTCTGTATGCCTGAAGCCTGGCGGTAGCTGTGGCTAAACTCAGTGCTGGTGAGGGCCTGAAGGCAGCGGACATTCAGCCCATTGGTTCCCACCACTGTGTGGCAGGGGGTTGCCGAGCTGCTGGCTGGTCACCACCTTCCTGCTCTCTTGATTTTGGCCCTTTCTCTTCCAAGTTGAGCCCGAGGTAGGCAGCCTTGTCCCAGATAGTTTCAGCCAATAGATCCCTGGCTGTATCCCTGGCTGTGGCACCCAGCTCCTGCTGCCCGGTGCTCTGCGGGTGTGTGGTGCTGCAGCTGTGGGAGGGGCACCAGTGATGGACAATGAAGGCTGGGAGCACAGGGCAGCGTGGGTGACTTCTGCTGTGCTAAGAGCTGAGGAGTTGGGGAGTGGGGCTTAGAGCAAGCTGTAAGTCATCCAGGGAGTGCACGGGAGGGTTTCCCCACTGCAGCACCCATTTGTTTTCCCCAGAAAAAAGAAATTCTTCGTAAATTATGTGTAAGGTGCAGCAAGCATGCTGTGTAGCTCATCTCCATAGCACAAGAAGCCAAGCAATCACCTGTCCTCACCATGCTCTTAACACGGGCTTTGTTAAACTCCCACCGCTGGCTTTCTCCATTGTTGGCTCCATCGCATGCTCAGTACCGCCCTCCTCTCCCCCTCCCGGCCCCGGCAGCAGCCCAGCCCTGCACCCCTCGGGTGGCAGCCGTGGCTGCAGGCTTGCAGGCTGGGCGCAGGGGAATGCCTGCTTTTTCTCAGGACACCTTCTGATAGTTGAAAGGAGAATGGGCCACCTAGATGCATGCCTGTTTTGGTGAGCGCTTATCCCACTGTGTCCTGTGTTTCACATTCACCGAGTTCCATCCTGCATCAGAGAACTCGTTGGGCGCAGGGCGGCGAGGCCATGGCACTGCTGCCAGAGCCGTGCGGGTGCCCCATCCCTGGGGGTGCCCGAGGCCGTGGGGTGGAATTGGGTGATCCGTAAGGTCCCTTCCGACCCCGTCCCCTGCTTCCGTGTCTCTCACCGTAGGGATTTAGAGGCTACGCAAACAATGTTAGCGAATACGAGCTGCCCGTGGGTGGGCAGACACCCAGCCCAGCGGCACGGCTCCGTTAGTGCTCCCGGCACTCGGAGCGCACGCCAGCACTGCCTGCTGCTCGGTGTGTTGCCATAGGGCCCATCAGCCCCTGCTCCCGTTGCTACCCAAGCTGCTTTGACTGGCTTCCAGCAGGCCCACTCCCTGCAGTGCTGCGCGTGGCGGTGCTGAGCCGTGCGTGCTGACCGGCGCCGCTTTCCTCCCCGCAG
Seq C2 exon
ATCTTCGAAACCAGCCGTACCGCCGGGCCGACGCGCTGAGGAGGAGCGTGCGGCGGCGCTTCGACGACCAGACCCTGCGCTCCGCCAACGGCACTGAGATCACCATGTGAGCTGAGGCCTCTGCGGAGCCGGGCTGCCAGCGGTGCCCCTCCCTGACCGCCTTGGGAACAGTACGGTTACCCCTACAGGGCTCAGACACCTAGAAATGCATAGGAACGTCAGCGATGGGCTCTCCGCTCAGCCGTAGCTAACAAGTGCCTAAAATGGAAGTACCTGCTCAAATTAATCAAAGCAATAGGACTTGATTTGATTGGGTATCTTTTGACACCGATACGTTATTCAGTATTTTTAACCAAAAAGTAAAGTACGTGTTGTTTTGGGGTGTTTAGTTGGGTTTGATTATATGAAAACTTAGCCATCGGTCTCCTGTTGGCCGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]