MmuEX0019398 @ mm10
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53126853-53133804:+
Coord C1 exon
chr2:53126853-53126976
Coord A exon
chr2:53128717-53128842
Coord C2 exon
chr2:53131840-53133804
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTATTCTCAATGCAGTGC
3' ss Score
5.13
5' ss Seq
AAGGTCACT
5' ss Score
3.39
Exon sequences
Seq C1 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAAAGATAACAGACATGTATACGAGGGAAAAGATGGCGCCATTGAAGACATTATCACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACCGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAAGAATACCATTACTAAACTATTGCTCTTTGTCACCTGATACTATTAAAAG
Seq C2 exon
ATCTTAGAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAGGGCTCAGATTTAACAAACACATAGGAATTTTAAAGTGATGGGTTCTCTTTTTAACCCCTGTTAACAAGTGCCTAAAATTGGAAGTAACTTGCTCAGATTAATCAAAGCAATAGGTTTGACTTAAATCTTTTTACATCAGTATGTTACTCAGTTTTTTAACCAAAATGTAAACTTCATATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.000 C2=0.771
Domain overlap (PFAM):
C1:
PF101074=Endonuc_Holl=FE(43.6=100)
A:
PF101074=Endonuc_Holl=PD(24.5=74.2)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAGGCAGCAGCAAGAGT
R:
GGCAGTTTCTTGGACACCCTC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types