HsaEX0026043 @ hg38
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152640791-152649834:+
Coord C1 exon
chr2:152640791-152640914
Coord A exon
chr2:152643419-152643544
Coord C2 exon
chr2:152647796-152649834
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCATTTTCAATGCAGTGC
3' ss Score
5.48
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
TCTCCTTCTCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGACGACAAGTTAAAGATAACAGACATGTATATGAGGGAAAAGATGGTGCCATTGAAGATATTATCACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAGGAATACCATTACTAAACTATTACTCTTTCTCACCTGATGCTCTTAAAAG
Seq C2 exon
ATCTTAGAAACCAACCATACAGACGAGCCGATGCGGTGAGGAGAAGCGTCAGGCGGCGCTTTGATGATCAGAACTTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGAACCTGAGACTGGCCTGCATGAATACAGGGTGTGCGTGAATGAAACTGCCCACATGAACTTTATGTGCTACGATTTAACTGCAGCCTTGAACACACACAAAAATATTCTTAAGGGCTCAGATTTAGCAAACACGGAAGAATTTTAAAATGAGCTCTCCTTTCAACCCTTGTTAACAAGTGCCTAAAAATGGAAGTACCTGTTCAGATTAATCAAAGCAATAGGATTTGATTTGATTAGGTATCTTTTTACACCAGTATGTTATTTTTAACCAAAATGTAAAGTTCTTATTAAACTCATTACCTGCCATTGTGATTGTCCCATCATGGCCCACCTGGTTTCCTGATGTTGTAAATAACATCAATGCATCTGCTGTGGGTCCTTTGCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_MULTIEX3-1/2=C1-C2
Average complexity
ME(1-2[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCAGCAGCAAGAG
R:
CGCACACCCTGTATTCATGCA
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development