DreEX0033104 @ danRer10
Exon Skipping
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4767195-4778861:-
Coord C1 exon
chr9:4778738-4778861
Coord A exon
chr9:4769880-4769973
Coord C2 exon
chr9:4767195-4767304
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCTCTCCACTCAGCCT
3' ss Score
7.15
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
Exon sequences
Seq C1 exon
TCTCCCTCTCATAAGAATAAGCGTCAGCAGCAGGAGTTGATTGCAGAGCTGAGGAAAAAGCAGGTGAAGGACAGCAGACACGTGTATGAGGGTAAAGACGGAGCCATTGAGGACATCATCACAG
Seq A exon
CCTTAAAGAAGAATAATATTACTAAATTCCCCAATGTGCACTGGAGAGTAAGGAACTCTTCCAGTAGTACCCCAGTGGATGCTACTCAGACCTG
Seq C2 exon
ATCTGAGAAACCAACCTTACAGGCGCGCTGATGCCGTCAGGAGGAGTGTCCGGAGACGCTTTGATGATCCCAATTTGCGGCCTGTCAACAACGCAGAGATGGTCATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.374 C2=0.861
Domain overlap (PFAM):
C1:
PF035358=Paxillin=FE(41.0=100)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000016814fB2796
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGTTGATTGCAGAGC
R:
GGGATCATCAAAGCGTCTCCG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]