MmuEX0002204 @ mm9
Exon Skipping
Gene
ENSMUSG00000079499 | 6530402F18Rik
Description
RIKEN cDNA 6530402F18 gene [Source:MGI Symbol;Acc:MGI:1923470]
Coordinates
chr2:29098758-29108513:-
Coord C1 exon
chr2:29107985-29108513
Coord A exon
chr2:29104333-29104398
Coord C2 exon
chr2:29098758-29104034
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTTAATTTGTTGCAGGTG
3' ss Score
10.01
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCCCCGATGGTGACCGTGAGTGATGGCAAGAGGATTTAGCCTCGGCATTAACTTGGAGCGGAGTGCAGGGGGGCGGTGAGGCGCCCCGCCATCTGGCCGGCGCCGCGCCAGGGGGATGTTCAGGCGCCTGGACCAGCAGCGGCGAAGCCCACCCAGGCCAGGGGCTGAGTGGGGCGCGCGTGCAGGTTCTCCCCTGGCTGCCCAGGGGGCCCCAAAAGTTTGCACTTGTTAACAGCGACCTCCCGATCGGCCCGGGAGGGCCATGCAAGCCGCGCGGTTGGCCCCCTTCCCTGGCCCGCGTCTCCGGGACGGCTGCGGGCGGGCCCCCCGGCGGCCCGAGGGTTCCCCAGCCCAGATCTGAGGGTGGCCACCGCAGCGGCGGCGCGGGGCAGGAGTCTCCAGCTCTCAACCCTGCGGCCCGTGCGCCCACCCAGCACCAGCCAGAGGGTGGCGGTCTCCGGCCTCTCGGGGCTCGCTCCGGGAAGCTGCTCCGAGCCCGG
Seq A exon
GTGCTGCTGCTAATGAACACATTCTCTCTCTTTTCTCTTCACAATGAAAGCCAAGCCTGAGCCCAG
Seq C2 exon
GCTGGTATGCGGTTGTGTGCAGCACGTCGCACATTAAGGGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCCCATGCCGGATCCCTGCAGATTTCCTCCTTATCCCATTTCCATCCACTGTCACAATTTGAGAGTCTGCCCGATTTGATCAGCTTCACCTCCAGGGGAGGTGTAACACCAAGGTTAGGAGGACACCAAGTTACAGGCAACTTTTTGATCTGCCCATCAGCAGCCTGAGAAACGCTGGCTCTGGATTTTCTGTATCAGCCATTTGGAAAACACAAGCTCCCACTATTGGCAGACCTGCAGTGCTTAAGTCAACGGTACACCCCAGACACCACCGCCTGGCAGATGTGACATTTCCATGCTGAGGTCCCAAGTGCCCCCTGACCCCACCACCACTTCTCCAGTGCCGCTCTGGGCCCCACCCATTCGGACTGCGCAGCCATGCTGCGCCTGCTGGCTCTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079499_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCTCCAGCTCTCAACC
R:
TCCAGGTCTTTAAAGGGCCCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: