HsaEX0044076 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132165527-132167044:+
Coord C1 exon
chr9:132165527-132165616
Coord A exon
chr9:132165979-132166113
Coord C2 exon
chr9:132166349-132167044
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTAATTTGTTGCAGGTG
3' ss Score
11.1
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
ATTGTGCCTATGATTGGGGGGCTGTTTCTCAGTGCCTGGCTCTTCATGGTTGGCCAGCACGTGGAGCACTCTGTTCATCTGTACATATAG
Seq A exon
GTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAGACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAG
Seq C2 exon
GCTGGAGGGTTGTTTTGCCGTTGTGTTGAGCACGTCACCCATTAAGAGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCTCATGCAGGATCCCTGCGGATTTTCTCCTTATCCCATTTCCATCCACTGTCACAATTTGAGAATCTGCCTGATTTGATCAGATTCACCTCCAGGGGAGGTGTGATACCAGGGTTAGGAGGACGTGAAGTTATGGGCAACTTTCTGATCTGTCCATCAGCAGTCTGAGAAACGCTGGCTCTGAATTTTCCGTGTCGGCCTTTTGGAAACAACAAGTTCCTCGCTGTTTGCAAAGCTTCAGTGCTCGGGTCCCTGGGACACCCCGGCCACCCTCGCCTGGTAGATGTGGCATTTCCATGCTGAGGCCGCGAGTCCCGCCTGACCCCGTCGCTGCCTCTCCAGGGCTTCTCTGGGCCGCGCCTCTGCAGACTGCGCAGCCATGCTGCATCTGCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=PU(13.0=45.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGAGCACTCTGTTCAT
R:
GGTATCACACCTCCCCTGGA
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development