RnoEX0061350 @ rn6
Exon Skipping
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7795312-7798933:-
Coord C1 exon
chr3:7798833-7798933
Coord A exon
chr3:7796325-7796390
Coord C2 exon
chr3:7795312-7795998
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTTAATTTGTTGCAGGTG
3' ss Score
11.06
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CGCTGTGAGGGTGACAGGGAGAAACCAGAGTCTGGAGAAAGCTCCCTTCCCAAAACTGGGGACACCGGGACTCCTGAGCCCGAACGTCCACCAAGGCAGCG
Seq A exon
GTGCTGCTGCTAATGAACACATTCTCTCTCTTCTCTCTTCACGATGAAAGCCAAGCCAGAGCTCAG
Seq C2 exon
GCTGTTATGCAGGCACGCGGAGCACAGTGCACATTAAGGGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCCCATGCCGGATCCCTGCGGATTTCCTCCTTATCCCATTTCCATCCACGGTCACAATTTGAGAGTCTGCCCGATTTGATCAGCTTCACCTCCAGGGGAGGTGTAACACCAAGGTTAGGAGGACGCCAAGTTACAGGCAACTTTTTGATCTGCCCATCAGCAGCCTGAGAAACGCTGGCTCTGGATTTTCTGTCTCGGCCATTTGGAGAACGCAAACTCCCCCGTTGGCAAACCAGACCTGCACTGTCGAATCAATGGTACAGCCCAGCCGCCATCGCCTGGTAGATGTGGCATTTCCATGCTGAGGTCCCAAGTGCCCCCTGACCCCACCACCTCTCCAGTGCCCCTCTGGGCCCCACCCATTCGGACTGCGCAGCCATGCTGCACCTGCTGGCCCTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=PU(13.0=45.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCCCTTCCCAAAACTGG
R:
GCATGGGGCTGGATCAGATTG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]