HsaEX0044076 @ hg19
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135037334-135042431:+
Coord C1 exon
chr9:135037334-135037626
Coord A exon
chr9:135041366-135041500
Coord C2 exon
chr9:135041736-135042431
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTAATTTGTTGCAGGTG
3' ss Score
11.1
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CGCTCAGCCCGGGCGGGCGATGCGGGCGGCGCGGGCGGCCCCCTCCCCCGGCCCGCGTCTCCGGGACGGCTGCGGGCGGCCCCCCCGGCGGCCGGAGGGCTCCCTGGCCCCGATCTGACGGCGGCGGCGGCGGCGGCCACAGCGGCGGGAGCGGCGCGGGGAAGGAGCAGCGGCTCGCAGCCCTCGGCCCGCGCCCCCACCCAGCGCCAGCCCGAGGGGGGAGGCGCAGCGCCGGAGGGTGGCGGTCCTCGGCCCTCCCAGGTCTCCGCGCCGGGAAGCCGCTCCGAGCCGGG
Seq A exon
GTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAGACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAG
Seq C2 exon
GCTGGAGGGTTGTTTTGCCGTTGTGTTGAGCACGTCACCCATTAAGAGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCTCATGCAGGATCCCTGCGGATTTTCTCCTTATCCCATTTCCATCCACTGTCACAATTTGAGAATCTGCCTGATTTGATCAGATTCACCTCCAGGGGAGGTGTGATACCAGGGTTAGGAGGACGTGAAGTTATGGGCAACTTTCTGATCTGTCCATCAGCAGTCTGAGAAACGCTGGCTCTGAATTTTCCGTGTCGGCCTTTTGGAAACAACAAGTTCCTCGCTGTTTGCAAAGCTTCAGTGCTCGGGTCCCTGGGACACCCCGGCCACCCTCGCCTGGTAGATGTGGCATTTCCATGCTGAGGCCGCGAGTCCCGCCTGACCCCGTCGCTGCCTCTCCAGGGCTTCTCTGGGCCGCGCCTCTGCAGACTGCGCAGCCATGCTGCATCTGCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-'0-3,'0-1,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=PU(13.0=45.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGCCCCGATCTG
R:
GGGCTCTTAATGGGTGACGTG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)