HsaEX0044075 @ hg19
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135037334-135041500:+
Coord C1 exon
chr9:135037334-135037626
Coord A exon
chr9:135040914-135041003
Coord C2 exon
chr9:135041366-135041500
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATTAAATTTGCCATTTCAGATT
3' ss Score
7.65
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
CGCTCAGCCCGGGCGGGCGATGCGGGCGGCGCGGGCGGCCCCCTCCCCCGGCCCGCGTCTCCGGGACGGCTGCGGGCGGCCCCCCCGGCGGCCGGAGGGCTCCCTGGCCCCGATCTGACGGCGGCGGCGGCGGCGGCCACAGCGGCGGGAGCGGCGCGGGGAAGGAGCAGCGGCTCGCAGCCCTCGGCCCGCGCCCCCACCCAGCGCCAGCCCGAGGGGGGAGGCGCAGCGCCGGAGGGTGGCGGTCCTCGGCCCTCCCAGGTCTCCGCGCCGGGAAGCCGCTCCGAGCCGGG
Seq A exon
ATTGTGCCTATGATTGGGGGGCTGTTTCTCAGTGCCTGGCTCTTCATGGTTGGCCAGCACGTGGAGCACTCTGTTCATCTGTACATATAG
Seq C2 exon
GTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAGACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCCCTCCCAGGTCTC
R:
CCATCGGCAACTTATTATGAAGTTT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)