HsaEX0044075 @ hg38
Exon Skipping
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
Coordinates
chr9:132161676-132166113:+
Coord C1 exon
chr9:132161676-132161719
Coord A exon
chr9:132165527-132165616
Coord C2 exon
chr9:132165979-132166113
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATTAAATTTGCCATTTCAGATT
3' ss Score
7.65
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
CGCAGCCCGGATCAGACCGAGAGATAAAAGCCCCGATGGTGATC
Seq A exon
ATTGTGCCTATGATTGGGGGGCTGTTTCTCAGTGCCTGGCTCTTCATGGTTGGCCAGCACGTGGAGCACTCTGTTCATCTGTACATATAG
Seq C2 exon
GTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAGACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358_MULTIEX2-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCCCGGATCAGACC
R:
CCATCGGCAACTTATTATGAAGTTT
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development