MmuEX0032535 @ mm9
Exon Skipping
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29103348-29108525:-
Coord C1 exon
chr2:29108470-29108525
Coord A exon
chr2:29104308-29104348
Coord C2 exon
chr2:29103348-29103808
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCACAATGAAAGCCA
3' ss Score
1.67
5' ss Seq
GAAGTCTCC
5' ss Score
-14.23
Exon sequences
Seq C1 exon
CAGAGGAAGTTACGCAGCCCGGATCAGACCGGGAGATAAAAGCCCCGATGGTGACC
Seq A exon
CCAAGCCTGAGCCCAGGTACCTGGATGAAGTGAGAGTTGAA
Seq C2 exon
TTACAGGCAACTTTTTGATCTGCCCATCAGCAGCCTGAGAAACGCTGGCTCTGGATTTTCTGTATCAGCCATTTGGAAAACACAAGCTCCCACTATTGGCAGACCTGCAGTGCTTAAGTCAACGGTACACCCCAGACACCACCGCCTGGCAGATGTGACATTTCCATGCTGAGGTCCCAAGTGCCCCCTGACCCCACCACCACTTCTCCAGTGCCGCTCTGGGCCCCACCCATTCGGACTGCGCAGCCATGCTGCGCCTGCTGGCTCTCTTCCTGCACTGCCTCCCGCTGGTCTCTGGGGACTATGACATCTGCAAATCCTGGGTGACCACAGATGAGGGCCCCACCTGGGAATTCTATGCCTGCCAGCCCAAGGTGATGCGCCTGAAGGATTATGTCAAGGTCAAAGTGGAGCCCTCAGGCATCACGTGCGGAGACCCCCCTGAAAGGTTCTGTTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=PU(13.0=45.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCGGGAGATAAAAGCCC
R:
GCCAATAGTGGGAGCTTGTGT
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: