MmuALTD0011876-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51949023-51950182:+
Coord C1 exon
chr2:51949023-51949085
Coord A exon
chr2:51949086-51949109
Coord C2 exon
chr2:51950109-51950182
Length
24 bp
Sequences
Splice sites
5' ss Seq
AATGCAAGT
5' ss Score
0.87
3' ss Seq
TTGTTTCCTTCCCTTTGCAGGGA
3' ss Score
13.45
Exon sequences
Seq C1 exon
GTTCTCATGGAAATTACAGTTAAAGGACTTCCTCCGAAAGTACTAGGTTCACCAGCATATCAG
Seq A exon
GTTGCTAATATGGATATTCTTAAT
Seq C2 exon
GGAACTCCAGCATTGTTTTTAATCCAGTTAATTTTCAACAACAATCTTTTAGAATGTGGTGTAGAAGATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-23-25,24-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAAGTACTAGGTTCACCAGC
R:
TTCTCATCTTCTACACCACATTCT
Band lengths:
104-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: