HsaALTD1005157-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151441905-151443329:+
Coord C1 exon
chr2:151441905-151441967
Coord A exon
chr2:151441968-151441991
Coord C2 exon
chr2:151443259-151443329
Length
24 bp
Sequences
Splice sites
5' ss Seq
AATGCAAGT
5' ss Score
0.87
3' ss Seq
GACTTCATTTTCTCCTTCAGGGA
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTCCTCATGGAAATTACAATTAAAGGACTTCCTCAGAAAGTATTAGGTTCACCAGCATATCAG
Seq A exon
GTTGCTAATATGGATATTCTTAAT
Seq C2 exon
GGAACTCCAGCTTTGTTCTTAATTCAATTAATTTTCAACAATTTCTTGGAATGTGGTGTATCAGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-25-26,26-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAAAGTATTAGGTTCACCAGC
R:
TTCATCTGATACACCACATTCCA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains