BtaALTD0018371-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44794560-44796408:-
Coord C1 exon
chr2:44796346-44796408
Coord A exon
chr2:44796322-44796345
Coord C2 exon
chr2:44794560-44794633
Length
24 bp
Sequences
Splice sites
5' ss Seq
AATGCAAGT
5' ss Score
0.87
3' ss Seq
CATCTCCCATCTTTCTTCAGGGA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GTTCTCATGGAAATTACAATTAAAGGACTTCCTCAGAAAGTATTAGGTTCTCCAGCATATCAG
Seq A exon
GTTGCTAATATGGATATTCTTAAT
Seq C2 exon
GGAACCCCTGCTTTGTTCTTAATTCAGTTAACTTTCAATAATAATCTATTGGAATGTGGTGTGGAAGACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-19-19,20-19,21-19-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAAAGTATTAGGTTCTCCAGC
R:
CGTCTTCCACACCACATTCCA
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development