RnoALTD0025656-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37619736-37620971:+
Coord C1 exon
chr3:37619736-37619798
Coord A exon
chr3:37619799-37619822
Coord C2 exon
chr3:37620898-37620971
Length
24 bp
Sequences
Splice sites
5' ss Seq
AATGCAAGT
5' ss Score
0.87
3' ss Seq
CTGTTTCCTTCCCTTTGCAGGGA
3' ss Score
13.86
Exon sequences
Seq C1 exon
GTTCTCATGGAAATTACAGTTAAAGGACTTCCTCAGAAAGTATTAGGTTCACCAGCATATCAG
Seq A exon
GTTGCTAATATGGATATTCTTAAT
Seq C2 exon
GGAACTCCAGCATTGTTCTTAATCCAGTTAATTTTAAACAACAATCTTTTAGAATGTGGTGTAGAAGATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-20-18,21-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTCCTCAGAAAGTATTAGGT
R:
ACACCACATTCTAAAAGATTGTTGT
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]