MmuEX0020822 @ mm9
Exon Skipping
Gene
ENSMUSG00000052403 | Gm13520
Description
predicted gene 13520 [Source:MGI Symbol;Acc:MGI:3701343]
Coordinates
chr2:25480790-25486302:+
Coord C1 exon
chr2:25480790-25480840
Coord A exon
chr2:25482813-25482889
Coord C2 exon
chr2:25486193-25486302
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTACCTTTGCTGCCGGCAGGTC
3' ss Score
9.12
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATACCTGGAATGAGCTGTACTTGGCATAGGAGCCTTTCCCTTGGAAATCTT
Seq A exon
GTCCCATCTTTCCTGGGCTGCCCTGAAAGCCCCGTTCTCCTGTAAACACAAGGACTAAACTGGATCTCATCTCCTAG
Seq C2 exon
TGTTGTATGCAGCAGGCGGCTTATATTGCAGCAGCTTCTGGCTGAGTCTCCAGTTCCCAACTCCCTGCAGAGGCACGGGGACTCATGCACAACTGCTTCTGGTTTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052403_MULTIEX1-3/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAATGAGCTGTACTTGG
R:
ATAGAAAACCAGAAGCAGTTGTG
Band lengths:
159-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: