MmuEX0019023 @ mm9
Exon Skipping
Gene
ENSMUSG00000026938 | Fcna
Description
ficolin A [Source:MGI Symbol;Acc:MGI:1340905]
Coordinates
chr2:25482161-25482851:-
Coord C1 exon
chr2:25482798-25482851
Coord A exon
chr2:25482487-25482522
Coord C2 exon
chr2:25482161-25482196
Length
36 bp
Sequences
Splice sites
3' ss Seq
AATGCCCCTTCTGTCTACAGGAG
3' ss Score
10.72
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAACGGGGCTTTCAGGGCAGCCCAGGAAAGATGGGACCTGCCGGCAGCAAAG
Seq A exon
GAGAGCCAGGAACCATGGGGCCCCCGGGAGTTAAAG
Seq C2 exon
GGGAGAAAGGCGATACAGGAGCTGCGCCATCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=PD(16.4=76.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGGGGCTTTCAGGG
R:
CGCAGCTCCTGTATCGCCTT
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: