HsaEX6063902 @ hg38
Exon Skipping
Gene
ENSG00000085265 | FCN1
Description
ficolin 1 [Source:HGNC Symbol;Acc:HGNC:3623]
Coordinates
chr9:134913581-134914809:-
Coord C1 exon
chr9:134914756-134914809
Coord A exon
chr9:134914385-134914420
Coord C2 exon
chr9:134913581-134913613
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATCCTGCCTCTTCCTCCAGGAG
3' ss Score
11.71
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAACGCGGTCTCCCTGGAGCCCCTGGAAAGGCAGGACCAGTGGGGCCCAAAG
Seq A exon
GAGACCGAGGAGAGAAGGGGATGCGTGGAGAGAAAG
Seq C2 exon
GAGACGCTGGGCAGTCTCAGTCGTGTGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085265_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=PD(11.5=58.3),PF0014713=Fibrinogen_C=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGCGGTCTCCCTGG
R:
ACACGACTGAGACTGCCCAG
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains