MmuEX6099962 @ mm10
Exon Skipping
Gene
ENSMUSG00000026835 | Fcnb
Description
ficolin B [Source:MGI Symbol;Acc:MGI:1341158]
Coordinates
chr2:28079901-28080949:-
Coord C1 exon
chr2:28080896-28080949
Coord A exon
chr2:28080586-28080621
Coord C2 exon
chr2:28079901-28079933
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATCGTGTTCTCTTGCCTCAGGAA
3' ss Score
8.69
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGAGAGTGGCCTTCCTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAG
Seq A exon
GAAACCAAGGAGAAAAAGGAATACGTGGAGAAAAAG
Seq C2 exon
GAGACTCTGGGCCCTCTCAGTCATGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026835-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=PD(13.1=66.7),PF0014713=Fibrinogen_C=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCCTTCCTGGAATTCCT
R:
GTAGCACATGACTGAGAGGGC
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types