RnoEX0035597 @ rn6
Exon Skipping
Gene
ENSRNOG00000009342 | Fcnb
Description
ficolin B [Source:RGD Symbol;Acc:621222]
Coordinates
chr3:6621187-6622180:-
Coord C1 exon
chr3:6622127-6622180
Coord A exon
chr3:6621818-6621853
Coord C2 exon
chr3:6621187-6621219
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTCTCTTCCCTTAGGAG
3' ss Score
10.34
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAGAGTGGCCTTCCTGGACACCCTGGAAAGGCGGGGCCAACTGGACCCAAAG
Seq A exon
GAGACCGAGGAGAGAAGGGAGTGCGTGGAGAAAAAG
Seq C2 exon
GAGACACCGGGCCCTCCCAGTCATGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009342-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=PD(11.5=58.3),PF0014713=Fibrinogen_C=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGTGGCCTTCCTGGAC
R:
TGTAGCACATGACTGGGAGGG
Band lengths:
86-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]