HsaEX6063902 @ hg19
Exon Skipping
Gene
ENSG00000085265 | FCN1
Description
ficolin (collagen/fibrinogen domain containing) 1 [Source:HGNC Symbol;Acc:3623]
Coordinates
chr9:137805427-137806655:-
Coord C1 exon
chr9:137806602-137806655
Coord A exon
chr9:137806231-137806266
Coord C2 exon
chr9:137805427-137805459
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATCCTGCCTCTTCCTCCAGGAG
3' ss Score
11.71
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAACGCGGTCTCCCTGGAGCCCCTGGAAAGGCAGGACCAGTGGGGCCCAAAG
Seq A exon
GAGACCGAGGAGAGAAGGGGATGCGTGGAGAGAAAG
Seq C2 exon
GAGACGCTGGGCAGTCTCAGTCGTGTGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085265-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.750
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
PF0139113=Collagen=FE(19.7=100)
C2:
PF0139113=Collagen=PD(11.5=58.3),PF0014713=Fibrinogen_C=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGCGGTCTCCCTGG
R:
ACACGACTGAGACTGCCCAG
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)