BtaEX6047731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048155 | FCN2
Description
Bos taurus ficolin (collagen/fibrinogen domain containing) 1 (FCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001010996]
Coordinates
chr11:106826832-106828073:+
Coord C1 exon
chr11:106826832-106826894
Coord A exon
chr11:106827306-106827341
Coord C2 exon
chr11:106827861-106828073
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATCCCCTGTCTCTCCCCAGGAG
3' ss Score
12.87
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGAACGAGGTTTGCCCGGAGTCCCTGGGAAGGCAGGGCCGGCTGGACCCAAAGGAAGCACAG
Seq A exon
GAGCCCAAGGGGAGAAGGGTGCACGTGGAGAGAAAG
Seq C2 exon
TCCTCAGGGTCACAAAGAGTCGGACACGAGTGAGCACTCACAAGACACCGTCACATGCTTTGACGACAAGTACAAAGTGCGCTGGTTGGGGCCAAGCATACCCCAAACGCCCCCAGGACTTTCCACGACCAGAGGCTCTGATGGTGGAAAGTGACGGGCCCGGAGGAGCTGACCCTCAGTGCCGGGAGCCTCAAAGCCCAGGAGAGGCGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048155-'2-4,'2-3,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.972
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(36.2=100)
A:
PF0139113=Collagen=FE(20.7=100)
C2:
PF0139113=Collagen=PD(1.7=1.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCAAAGGAAGCACAG
R:
GTATGCTTGGCCCCAACCAG
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]