MmuEX0020822 @ mm10
Exon Skipping
Gene
ENSMUSG00000052403 | Fcnaos
Description
ficolin A, opposite strand [Source:MGI Symbol;Acc:MGI:3701343]
Coordinates
chr2:25625270-25627709:+
Coord C1 exon
chr2:25625270-25625320
Coord A exon
chr2:25627293-25627369
Coord C2 exon
chr2:25627656-25627709
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTACCTTTGCTGCCGGCAGGTC
3' ss Score
9.12
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATACCTGGAATGAGCTGTACTTGGCATAGGAGCCTTTCCCTTGGAAATCTT
Seq A exon
GTCCCATCTTTCCTGGGCTGCCCTGAAAGCCCCGTTCTCCTGTAAACACAAGGACTAAACTGGATCTCATCTCCTAG
Seq C2 exon
GCTGCCCTTCTAAAATGTCCCATCTCCTGCTGCCACATGTGCAGGCATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052403-'8-18,'8-13,14-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCCCACATGTAAAGCC
R:
AGCTTGCTGCAGTTGGAGATG
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types