MmuEX1010355 @ mm10
Exon Skipping
Gene
ENSMUSG00000052403 | Fcnaos
Description
ficolin A, opposite strand [Source:MGI Symbol;Acc:MGI:3701343]
Coordinates
chr2:25627293-25629111:+
Coord C1 exon
chr2:25627293-25627369
Coord A exon
chr2:25627656-25627709
Coord C2 exon
chr2:25628954-25629111
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGGATGTGTTTTCAGGCT
3' ss Score
7.07
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCCCATCTTTCCTGGGCTGCCCTGAAAGCCCCGTTCTCCTGTAAACACAAGGACTAAACTGGATCTCATCTCCTAG
Seq A exon
GCTGCCCTTCTAAAATGTCCCATCTCCTGCTGCCACATGTGCAGGCATATGCAG
Seq C2 exon
GCTGCTGACCTCCCTCTGTCCTCACTGGCACCAGTTCCTACAGGAAGTGCTCTTTCCTGCCCCAGGCCTGAACCCTGAGGTTCATCGGAGTAGCCAGCTCTCTAACAGCAATGGCTTCCCCCATCTCCAACTGCAGCAAGCTGAGCACAGCCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052403_MULTIEX1-6/6=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCGTTCTCCTGTAAACAC
R:
TGGCTACTCCGATGAACCTCA
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types