MmuEX1010351 @ mm10
Exon Skipping
Gene
ENSMUSG00000052403 | Fcnaos
Description
ficolin A, opposite strand [Source:MGI Symbol;Acc:MGI:3701343]
Coordinates
chr2:25609318-25627369:+
Coord C1 exon
chr2:25609318-25609469
Coord A exon
chr2:25625270-25625320
Coord C2 exon
chr2:25627293-25627369
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTCCTGTTCTTCAGATA
3' ss Score
8.92
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AGTTGATGACTCCAAGGTGTCCCTCACCTTTGTGTCAACCTGCAGGGCAGCACCCATTATCATCTTGGAGAGCACATGGGCTTTGTGGGGACCCCTCCATGGCCCAGGGTTACCTCCTCATTTCTGGACAACGTTTGCATGCGCTCAGCCAG
Seq A exon
ATACCTGGAATGAGCTGTACTTGGCATAGGAGCCTTTCCCTTGGAAATCTT
Seq C2 exon
GTCCCATCTTTCCTGGGCTGCCCTGAAAGCCCCGTTCTCCTGTAAACACAAGGACTAAACTGGATCTCATCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052403-'4-13,'4-11,12-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- MmuALTA0018344-1/4
- MmuALTA0018344-3/4
- MmuALTD0014441-1/3
- MmuALTD0014441-2/3
- MmuEX0019023
- MmuEX0020822
- MmuEX0047743
- MmuEX1010350
- MmuEX1010354
- MmuEX6099604
- MmuINT0003718
- MmuINT0003722
- MmuINT0003723
- MmuINT0063786
- MmuINT0063787
- MmuINT0063788
- MmuINT0063789
- MmuINT0063790
- MmuINT0063791
- MmuINT0063792
- MmuINT0161500
- MmuINT0161502
- MmuINT1010231
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGAGCACATGGGCTTT
R:
TACAGGAGAACGGGGCTTTCA
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types