MmuEX0047743 @ mm10
Exon Skipping
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25621066-25621674:-
Coord C1 exon
chr2:25621608-25621674
Coord A exon
chr2:25621375-25621458
Coord C2 exon
chr2:25621066-25621173
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTGGCTCTTGGCAGGCA
3' ss Score
7.38
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGACTCGAGGAATTTGCTGCCTGCCAGTCGCACGCCTTCATGAAGGGCGTTTTCACTTTTGTCACAG
Seq A exon
GCACTGGTGCGACTTTTGGCCTGCTGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGAGCTTCCTAGTGTCTGCCA
Seq C2 exon
TTGCAGGATCTGTGGCCAGCTACAGAGTGACAAGTATGGAGTGTCAGAAATGCAGCAATCTCTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGACATAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(23.4=100)
A:
PF151101=TMEM141=FE(29.8=100)
C2:
PF151101=TMEM141=PD(28.7=77.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGAGGAATTTGCTGCCTG
R:
TTATGTCTTTGGGGAGCTGCC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types