RnoEX0091341 @ rn6
Exon Skipping
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2844578-2845289:-
Coord C1 exon
chr3:2845223-2845289
Coord A exon
chr3:2844988-2845071
Coord C2 exon
chr3:2844578-2844685
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTGGCTCTTGGCAGGCA
3' ss Score
7.38
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGACTCGAGGAATATGCTGCCTGCCAGTCGAACGCCTTCATGAAAGGCGTTTTCACTTTTGTCACAG
Seq A exon
GCACTGGTGTGACTTTTGGCCTGCAGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGGGCTTCCTGGTGTCTGCCG
Seq C2 exon
TTGTAGGATCTGTGGCCAGCTACAGAGTGACAAGAATGGAGTGTCAGAAATGCAGCAATCTGTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGGCATGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254-'2-5,'2-4,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(22.9=100)
A:
PF151101=TMEM141=FE(29.2=100)
C2:
PF151101=TMEM141=PD(29.2=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGAATATGCTGCCTGC
R:
CTCATGCCTTTGGGGAGCTG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]