DreEX6013445 @ danRer10
Exon Skipping
Gene
ENSDARG00000101963 | tmem141
Description
transmembrane protein 141 [Source:ZFIN;Acc:ZDB-GENE-060929-272]
Coordinates
chr5:53658564-53661932:-
Coord C1 exon
chr5:53661866-53661932
Coord A exon
chr5:53661547-53661630
Coord C2 exon
chr5:53658564-53658671
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTTTACTTTTTCATACAGGCA
3' ss Score
8.69
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GGCTTGCAGCAGTATGTTGCCTGTCAGTCTTATGCCTTTATGAAAGGCACAGCAAGCTTCATACTAG
Seq A exon
GCACAGTGGGTATATTTTTTGGACAGAGAGCACTTCAGAAAATAATCAAATATCCCCTTCAGTGGAACCTTTTTGTATCTATTG
Seq C2 exon
TTTCTTCCTCTGTATTCAGCTATTCGGTAACTCGCTGGGAAACCATGAAGTGTTCCGATGTCTGGTTATTTCTTGAGACAGGAAATATTCCTGACAGAAACTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101963-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(22.9=100)
A:
PF151101=TMEM141=FE(29.2=100)
C2:
PF151101=TMEM141=PD(29.2=75.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTATGTTGCCTGTCAGT
R:
TGTCAGAGTTTCTGTCAGGAAT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]