MmuALTA0018344-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25621608-25621985:-
Coord C1 exon
chr2:25621934-25621985
Coord A exon
chr2:25621675-25621755
Coord C2 exon
chr2:25621608-25621674
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
ATCCATTCTCCCTCGCCAAGGCC
3' ss Score
3.38
Exon sequences
Seq C1 exon
GGTGAATCTGGGCTTGTCCCGTGTGGATGACGCCGTGGCCGCCAGGCACCCG
Seq A exon
GCCAGGTCGTGGCTAAAGGAGAAGCAGGAGGCGAGGAAAGAGAACTGAGCCACGAACACCTTCCCCGCCCCCTAATCCCAG
Seq C2 exon
GGACTCGAGGAATTTGCTGCCTGCCAGTCGCACGCCTTCATGAAGGGCGTTTTCACTTTTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-0-5,0-4,0-3,0-1-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(17.0=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATCTGGGCTTGTCC
R:
CTGTGACAAAAGTGAAAACGCCC
Band lengths:
119-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types