MmuINT1010231 @ mm10
Intron Retention
Gene
ENSMUSG00000052403 | Fcnaos
Description
ficolin A, opposite strand [Source:MGI Symbol;Acc:MGI:3701343]
Coordinates
chr2:25625270-25627369:+
Coord C1 exon
chr2:25625270-25625320
Coord A exon
chr2:25625321-25627292
Coord C2 exon
chr2:25627293-25627369
Length
1972 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CTTACCTTTGCTGCCGGCAGGTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
ATACCTGGAATGAGCTGTACTTGGCATAGGAGCCTTTCCCTTGGAAATCTT
Seq A exon
GTAAGTCAACTCGGAGCTCTTGGTTCCCTAGCAGGATGGGTGGAAGGAAGGAAAAGGCTCAGGCCAGGCAGCGTAGTGGAAGGCAGGTGATGGCCAAGAGACTGCTTCCTCACCATTGGCTGTGAGCAGGTGCAGGTAGTCATTACCCAACCAGAACTCCGTGCCCAGGTTGCCAAAGCCTCTTTTATAGGAGTCCCAGTCTCGGAAGAAATCGATAGACCCGTCCACTCGTCGTTGAAAAACCTGTGGCGTGGGGCAGGGGAGCATGTGGGTATCAGGTTCCTAAGAGCAGGAACCCGAGGGATATGTCTAGGTCCAGGGCTTTGGTTGGTTATTTGGTTTTTGTTGGTTTGTTTTGTTTTTCTCACTCTTATAAAGAACCTCATGAGTGAGGAATAGTTTTCAGGGGCAGGGAGTACAGGGGACTGAGAAGGTAACTGATAGATGATAGTGGCCCAGGGCTGACATGTTTTGATGCATCTGTTATGACTGGGGTCCTGTCGCCCACTTAACTCACTTCACAGAGTTCTAGATCTGGTCCACCAGTGCTTGGGTCTCGCTGGAGGGTGAAGCACCACATTATTTTTTTTTTTTCCCCCTGGTTGCTCTGCTCTCTCCCTGACTTCAGCTCTCCAGAGTGTGGCCGCTGTGTGCAAACCTCTTATGCCCCACACTGAGCCTCCTCACTCACGGTCCAGCCCCCACCGTCCACATCCATGTCACAGAGCACAGTCAGTGGCCGGCAGTCAGGAAGATGGATGGTGTACCAGCCAGTCAGGAAGATGCCCCGTGTCAGCAAGTCTTTGCAGCTCCGGGGTCCTGTACCATGGGGAAGTGGGCAGGGTTGGCCTGTATCTGGGGTATACTCCCTGGGTGGGGTCCTGCTGTATTCTTGAGAGCAGGAAGTAGGAGGGGCCAGCTGAGAGGTCACTTACCTCTCTGGCACAGGGTGTCTCCCAGCTCCTTTTCACCTGGGCAGAGTCATGAGTGTTATTTTCTTCCTTGGTCCCTTCCCATCACATATAACTCCCCTAGACTCCATATTCTACTTGGCATACATGGTGCCGTACCCTCCTGCTAAAGAGCCCAGCACACCCATCCTGGCTGGCCCCATTAGGCTCCTTTGTGTTTGGCTGCTGTTATGCATTGTCCTGTCTGTGACTATACCCAGAGTTGGGATAGGTCAGGGTGCTGGCTGGGAGGCTGGCTGGGCCCACAGATGCTTCATGCTACTTCAGCCCCCGAAGCTCACTCTTCTTCACTCACAACCAGAGGGTAAAGACACTGGAAACGTTAGAAGAGACTATGGGATGTACTTACCCAGAGATGGCGCAGCTCCTGTATCGCCTTTCTCCCCTGGAGGAATACAGCATACTAGCCTTGTCCCAGAGCTGGAATCCTGCCACATCCTCTCCTGTACCCCTCCCAGCTTCCAGCCTCTCCCCTAGTCTGTGAGCCCCCAACATTCTGATATGCATAATGATCCGGGGAGACTTTGGGGACCCCTGAAGTAGTGCTTCTGGGAACACCCACCTTTCTTTGTATTCAAGACTCCCCTTAAGCCAACAAGACCCTAATCCCATATTGCTCCATGTGGAGCTGTCCTTCCTGGTCCCTTCCTAAGGAGACTTGTTTACTAGGCTCACCTTTAACTCCCGGGGGCCCCATGGTTCCTGGCTCTCCTGTAGACAGAAGGGGCATTCTTACAGTGCTGGTTCTTTTTCACTTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCACCTATGTGTCCATCCATGCGAGCAGAACTTGTAGGAGAGAGATCTGAATGCCCAGCCTGTAGGAAGGGGGCAGGCATGCATCTGGACATAGGGGAGGATGGTGTGTGGGCTCAGGTGCTACTGGCACCACTCTCAAGACCTGTCTGGATCTTAGGCAGATAGACCCATGTGAGAATTCCCTCTTACCTTTGCTGCCGGCAG
Seq C2 exon
GTCCCATCTTTCCTGGGCTGCCCTGAAAGCCCCGTTCTCCTGTAAACACAAGGACTAAACTGGATCTCATCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052403:ENSMUST00000155684:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types