MmuEX6099604 @ mm10
Exon Skipping
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25610470-25611986:-
Coord C1 exon
chr2:25611932-25611986
Coord A exon
chr2:25611446-25611546
Coord C2 exon
chr2:25610470-25610630
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTGCTCTGCCCAGTGA
3' ss Score
6.72
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTGATGACTATGGAAAACGTAAAGG
Seq A exon
TGAAGAAAAGAAAAACTTCCGTAGCAGACATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGG
Seq C2 exon
GACATAGCTGGCCGCTTCCTAGCTCAGAAAAATACAGAGGAGAACCTGGAGCTACAGATGGAGGATTGCGAGGAGAGGCGGACACAGTTAGAGGCCCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACTCCCAGCGCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGACTTGGATTTCC
R:
CAACAGCGCTGGGAGTCTG
Band lengths:
212-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types