GgaEX7009912 @ galGal4
Exon Skipping
Gene
ENSGALG00000001095 | CCDC183
Description
coiled-coil domain containing 183 [Source:HGNC Symbol;Acc:HGNC:28236]
Coordinates
chr19:833653-834178:-
Coord C1 exon
chr19:834118-834178
Coord A exon
chr19:833929-834029
Coord C2 exon
chr19:833653-833813
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTCGTCCCACCCAGGCT
3' ss Score
8.65
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CAAGCCAGGTATGACCTGGCTGTGGACTTCCCCTCCCTGCTGATGCAGGACTCGGCGCTGG
Seq A exon
GCTCCCAGGTGCAAGCCACCAGGTCGCAGATCGAGCACGAGTCCTTTGTGACGGCGGAGGTGGAGAAGGCCAAGGCTGCAGTGCAGTGCTCCCGCGTCTGG
Seq C2 exon
GACATCACCAGCAGGCTGCTGGCACAGCAGAAGTCCACGGCAGAGCTGGAGCAGCACATCAGGGCCTGCAAGGAGAAGCGGCGGGCACTGAAGGACACGCTGCAGGAACTGGAGCTGAAGCATGCAGAGCTGAAGTTCCACCAGCCCCCGAGTGCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001095-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGACCTGGCTGTGGACT
R:
CTGATAGCACTCGGGGGCT
Band lengths:
215-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]