HsaEX0034335 @ hg19
Exon Skipping
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139699214-139700690:+
Coord C1 exon
chr9:139699214-139699268
Coord A exon
chr9:139699809-139699909
Coord C2 exon
chr9:139700530-139700690
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCTGCTCTGCCAGTGA
3' ss Score
7.92
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCTGAAAT
Seq A exon
TGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACCAGTCGGGCGTGACTGCTGTGGTGGAGAAGGTCAAGAGTGCTGTACGGTGCTCTCACGTCTGG
Seq C2 exon
GACATCACTAGCCGCTTCCTGGCCCAGAGGAACACGGAGGAGAACCTGGAGCTGCAGATGGAGGACTGTGAGGAGTGGCGGGTGCAGCTGAAGGCCCTGGTGAAGCAGCTGGAGCTGGAGGAGGCCGTGCTCAAGTTCCGCCAGAAGCCTAGCTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.295 A=0.281 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGGACTTGGACTTCC
R:
TGATGGAGCTAGGCTTCTGGC
Band lengths:
214-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)