BtaEX0019336 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106365688-106367114:-
Coord C1 exon
chr11:106367060-106367114
Coord A exon
chr11:106366456-106366556
Coord C2 exon
chr11:106365688-106365848
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCTGCTGCGCCCAGTGA
3' ss Score
5.68
5' ss Seq
TGGGTACTA
5' ss Score
1.7
Exon sequences
Seq C1 exon
GGCCGGCGGGACTTGGACTTCCCCTCCAACCTGATGGGTCCAGAAACTCTGAAAG
Seq A exon
TGAGGAAGAGAGAGGCCTCCAAGGCTGACGTTGAATACCAAACGAATGTGACTGCTCTGGTGGAGAAGGTCAAGACTGCCGTGCAGTGCTCCCACCTCTGG
Seq C2 exon
GACATTGCTGGACGGTTCCTGGCTCAGAAGGGCACGGAGGAGGACCTGGAGCTGCAGATGGAGGACTGTGAGGAGAGGCGGGCGCAGCTGGAAGCCTTGATGAAGAAGCTGGAGATAGAGGAGGCCACGCTCAAGTTCCGCCAGACGCCCAGCTCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.147 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGGGACTTGGACTTC
R:
GACGGAGCTGGGCGTCTG
Band lengths:
211-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development