BtaINT0081421 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106366456-106367114:-
Coord C1 exon
chr11:106367060-106367114
Coord A exon
chr11:106366557-106367059
Coord C2 exon
chr11:106366456-106366556
Length
503 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTCCCCTCTGCTGCGCCCAGTGA
3' ss Score
5.68
Exon sequences
Seq C1 exon
GGCCGGCGGGACTTGGACTTCCCCTCCAACCTGATGGGTCCAGAAACTCTGAAAG
Seq A exon
GTAAGCGCTCAGCTCCCACTGCCCCAGCCAAGGTCCAGAGAGGTTGGTCACCATGAGGCTGGGTGTCACCTGCAGTGGCCAGGGTGAGGGAGACCGATGAACCCCGAGCCCTCCCTGGCGGGCCCTGCACAGGCACACACCAATTGCCACAGCACTGGCTTCAGGGTGCTGCTACTGGCTCTGGGCTCTCGGCCAGGTGTGGCTAACCCCACCCCCGCACCCCGCCTCTCAGCTGTAAAATGCACTCAGCAATGCCCCCCTGGAACCCAAGCCCCTCTGAGAAGCTCCACTAAGCCCCGCTACGCCAGCCGCTTCTGGTCCTGCTCTGGATGGAGCCGCTCGAGGGCTGGCTGAGGAGGGAGCCAGTTAAGATACAGGCAACTCTGAAGGCTACCCAGCTCTTGGGTGGCCTCCCCTGAGGACATGGGGGGCATCTGATGGCCCGCACAGAGCTCCCACGCCCTCCCTGCATGCTGGCCGTCCTTCCCCTCTGCTGCGCCCAG
Seq C2 exon
TGAGGAAGAGAGAGGCCTCCAAGGCTGACGTTGAATACCAAACGAATGTGACTGCTCTGGTGGAGAAGGTCAAGACTGCCGTGCAGTGCTCCCACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development