HsaINT0087331 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:136804762-136806672:+
Coord C1 exon
chr9:136804762-136804816
Coord A exon
chr9:136804817-136806077
Coord C2 exon
chr9:136806078-136806672
Length
1261 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
CTCTCCCCCGGACTGGCCAGGAC
3' ss Score
4.15
Exon sequences
Seq C1 exon
GGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCTGAAAT
Seq A exon
GTAAGCGCTCAGCTCCCCACCTGCCCCCAGCCAGGGTCCCAAGGAGAGGCTGGCACTGATTCAGGCCAACGGATCAAGTCACCCTGAGGCCAGGTGTGACATGTGGTCGCCAGGGTGAAGGGAAGGACAGGTCCCTGCCTCTCCCTCCAGAGGCTGAGAGCCTGTAGCCAAATGTGGCCTCAGAGATGCTGGCCCCAGCACCCAAGGGCCCTGCACCAAGGGCCCAGTCCCCAGTGACTCTGCAGAGGATGAGCATCCTGACCCCTAAGCTGCCTCTGAGAAGCACCACCGGGCCCACAGTGCTCACAGTGCTGCGCCACTCACTCCGGGTCCACCTCTGCTCTGGGGCTGCCTGGGGCGTCCCTGCAGGGCTGGGCTGAGGAGGGAGCAGGTTGGGGCGGGGGCAGGCATCTCTGAAGGATGCCTGTGTCTTGGGTGGCCGCCCCAGCAGCTGGGCAGGTACAGAGGTGTCTGACAGCCTTACACAGAGCCCCTGAGCCATCCCTGCATGCTGACTGCCCCTCCCCTCTGCTCTGCCAGTGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACCAGTCGGGCGTGACTGCTGTGGTGGAGAAGGTCAAGAGTGCTGTACGGTGCTCTCACGTCTGGGTAATGCCCCTGGCGCTCCCAGAGAATGGCAGGAGGGTGGCTGAGCCTCTCACGTCTGGGTAATGCTCCCTGGCACTCCCGGAGCATGGCAGGAGGGTGGCTGAGCTGGGCTGGGGTCTGAGGCACTCTGAAATGGACACACAAAGTGGCAACTCCCTCGGCCGCCCCAAATCCTTTTATCTTAATCCCATCTGTGTATCTGCGTTTATTATTATTAGGCCTTGAGCTCCTAACCACTGCCCTGACACAAGCTTGTCCACTGTCAGACAAGTGACTCAAGTGACACAACGTCCTTCAGTGATGATCTCCTTATCTCTACATGGGGTTATCTACCCTCTCTGCCTGCCATTAGGGTCGTGTGCAATGACATCCACAAAGCGCTTCACCCCTGCTAAGTGTGGTGGTGCACACCTGTGGTCCCAGCTACTCAGGAAGCTGAGGTGGGAGGATCGCTTGAGTCTGGGAGGTTGAGGCTGCAGTGAGCTGTGATCACACTTGTGAATGAGCACAGAGAAAGTGCACTAGCGTCTAGGAGGGGCCCAGAAGAAACCAGTTCTGTGAAGCCCCCTCTGCCCACCATCCTGGCCCACACCTGCTTCTCTCTCCCCCGGACTGGCCAG
Seq C2 exon
GACATCACTAGCCGCTTCCTGGCCCAGAGGAACACGGAGGAGAACCTGGAGCTGCAGATGGAGGACTGTGAGGAGTGGCGGGTGCAGCTGAAGGCCCTGGTGAAGCAGCTGGAGCTGGAGGAGGCCGTGCTCAAGTTCCGCCAGAAGCCTAGCTCCATCAGGTGCCCCGGGCTTCCGGGGCTGCGGGCCACCCACCCCAGTCTCACAAAGGCCCCGGGCTGCAGCCAGGCTGGGAGCTGGGAGTATACCCACTGCCAACAAGCCTGTGTGTCCCACAGAGGGGCCAGGGGACTCCACTTGCACACACCTGAGCTTCTGAGTCCCTGATTCTGGCACAGCACCCAACTCAGGACTGGGCTCCTGGGTGGCCCACCATGGCTCTCGGGCCTGTGCCCCTCACTGCTGTGTCCCTATTGCCTTCTGCAGCTTCAAGTCCGTTGAGAAGAAAATGACAGACATGCTAAAAGAGGAAGAAGAGAGGCTCCAGCTGGCGCACAGCAACATGACCAAGGGCCAGGAGCTGCTGCTGACCATCCAGATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATTAACTTGCCTGCGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273066:ENST00000415992:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCCCTCGAACCTGAT
R:
GAAGCTCAGGTGTGTGCAAGT
Band lengths:
357-1618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development