RnoEX0017863 @ rn6
Exon Skipping
Gene
ENSRNOG00000017044 | Ccdc183
Description
coiled-coil domain containing 183 [Source:RGD Symbol;Acc:1560370]
Coordinates
chr3:2834378-2835687:-
Coord C1 exon
chr3:2835633-2835687
Coord A exon
chr3:2835132-2835232
Coord C2 exon
chr3:2834378-2834538
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTGCTCTGCCCAGTGA
3' ss Score
6.72
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTAATGAGTATGGAAAGCATGAAGG
Seq A exon
TGAAGAAAAGAGAATCTTCCGTAGCAGATATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAAGGTCAAATCCGCTGTACAGTGCTCCCACCTCTGG
Seq C2 exon
GACATAGCTGGCCGCTTCCTGGCGCAGAAGACTACAGAGGAGAACCTAGAGCTGCAGATGGAGGATTGTGAGGAGCGGCGGACACAGTTAGAGGCCCTGATGAAGAAGCTAGAACTTGAGGAGGCTGTGCTCAAGTTCCACCAGACACCCAGCTCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017044_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGACTTGGATTTCC
R:
AACAGAGCTGGGTGTCTGGT
Band lengths:
211-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]