HsaEX0034334 @ hg19
Exon Skipping
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139698954-139699909:+
Coord C1 exon
chr9:139698954-139699079
Coord A exon
chr9:139699214-139699268
Coord C2 exon
chr9:139699809-139699909
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCCACCTCCCATCAGGGC
3' ss Score
8.32
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAAGGGAGGCGTCCTTCATCGAGGAGCGCCGGGCAAGGGAGAACCGGCTCAACCAGCAGAAGAAGCTGATCGACAAGATCCACACGAAGGAGACCAGCGAGAAGTACCGCCGG
Seq A exon
GGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCTGAAAT
Seq C2 exon
TGAGGAGAAAAGAGACCTCCACAGCAGAAATGGAATACCAGTCGGGCGTGACTGCTGTGGTGGAGAAGGTCAAGAGTGCTGTACGGTGCTCTCACGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.363 A=0.295 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACAAGATCCACACGAAGG
R:
CACCGTACAGCACTCTTGACC
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)