GgaEX1013365 @ galGal4
Exon Skipping
Gene
ENSGALG00000001095 | CCDC183
Description
coiled-coil domain containing 183 [Source:HGNC Symbol;Acc:HGNC:28236]
Coordinates
chr19:833929-834408:-
Coord C1 exon
chr19:834280-834408
Coord A exon
chr19:834118-834178
Coord C2 exon
chr19:833929-834029
Length
61 bp
Sequences
Splice sites
3' ss Seq
GACAATGGATGTCCTTGCAGCAA
3' ss Score
6.41
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAGGACCTGGCCATGCTGGAAGCCCAGTTCTTGGCGGAGGAGGAGCTCAGACACCGCACCCTGTCTGCCCAGAAGGTGCAAACCGACTGGCTGTGGCTCAAGGAGGCGAGCAAAAAGCACTCGAGAGCG
Seq A exon
CAAGCCAGGTATGACCTGGCTGTGGACTTCCCCTCCCTGCTGATGCAGGACTCGGCGCTGG
Seq C2 exon
GCTCCCAGGTGCAAGCCACCAGGTCGCAGATCGAGCACGAGTCCTTTGTGACGGCGGAGGTGGAGAAGGCCAAGGCTGCAGTGCAGTGCTCCCGCGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001095_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAGCTCAGACACC
R:
CACAAAGGACTCGTGCTCGAT
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]