RnoEX6015898 @ rn6
Exon Skipping
Gene
ENSRNOG00000017044 | Ccdc183
Description
coiled-coil domain containing 183 [Source:RGD Symbol;Acc:1560370]
Coordinates
chr3:2835132-2835910:-
Coord C1 exon
chr3:2835785-2835910
Coord A exon
chr3:2835633-2835687
Coord C2 exon
chr3:2835132-2835232
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTTTCTCCTCTCAGGGC
3' ss Score
11.34
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAGGGGAGGCAACCTTTATCGAGGAGCGAAGAGCACGGGAGAACCGACTGAACCAGCAAAAGAAGCTTATTGACAAGATCCACACCAAGGAGACAAGCGAGAAGTACCGCCGT
Seq A exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTAATGAGTATGGAAAGCATGAAGG
Seq C2 exon
TGAAGAAAAGAGAATCTTCCGTAGCAGATATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAAGGTCAAATCCGCTGTACAGTGCTCCCACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017044-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
PF053358=DUF745=PD(14.5=45.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCAAGGAGACAAGCGAG
R:
AGAGGTGGGAGCACTGTACAG
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]