BtaEX6047700 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106366456-106367338:-
Coord C1 exon
chr11:106367213-106367338
Coord A exon
chr11:106367060-106367114
Coord C2 exon
chr11:106366456-106366556
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCTCCCTCTCTCCAGGGC
3' ss Score
12.25
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGAACATGAGGCAAGGGGAGGCCACCTTCATCGAGGAGCGCCGGGCACGAGAGAACCGGCTGAACCAGCAGAAGAAGCTGATCGACAAGATCCACACCAAGGAGACGAGCGAGAAGTACCGCCGG
Seq A exon
GGCCGGCGGGACTTGGACTTCCCCTCCAACCTGATGGGTCCAGAAACTCTGAAAG
Seq C2 exon
TGAGGAAGAGAGAGGCCTCCAAGGCTGACGTTGAATACCAAACGAATGTGACTGCTCTGGTGGAGAAGGTCAAGACTGCCGTGCAGTGCTCCCACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933-'6-10,'6-7,7-10=AN
Average complexity
A_C2
Mappability confidence:
90%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.605 C2=0.147
Domain overlap (PFAM):
C1:
PF053358=DUF745=PD(16.5=45.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGAGAACCGGCTGAAC
R:
TTCTCCACCAGAGCAGTCACA
Band lengths:
147-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]