MmuEX6099603 @ mm9
Exon Skipping
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25466966-25467714:-
Coord C1 exon
chr2:25467589-25467714
Coord A exon
chr2:25467452-25467506
Coord C2 exon
chr2:25466966-25467066
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTTCTCCTCTCAGGGC
3' ss Score
12.02
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAGGGGAGGCAACCTTCATCGAGGAGCGACGAGCCCGGGAGAACCGGCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGTACCGCCGT
Seq A exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTGATGACTATGGAAAACGTAAAGG
Seq C2 exon
TGAAGAAAAGAAAAACTTCCGTAGCAGACATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGAAGAAGCTCATAGACA
R:
TGCACAGCAGATTTGACCCTC
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: