MmuEX6099603 @ mm10
Exon Skipping
Gene
ENSMUSG00000026940 | Ccdc183
Description
coiled-coil domain containing 183 [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25611446-25612194:-
Coord C1 exon
chr2:25612069-25612194
Coord A exon
chr2:25611932-25611986
Coord C2 exon
chr2:25611446-25611546
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTTCTCCTCTCAGGGC
3' ss Score
12.02
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAGGGGAGGCAACCTTCATCGAGGAGCGACGAGCCCGGGAGAACCGGCTGAACCAGCAGAAGAAGCTCATAGACAAGATTCACACCAAGGAGACCAGCGAGAAGTACCGCCGT
Seq A exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTGATGACTATGGAAAACGTAAAGG
Seq C2 exon
TGAAGAAAAGAAAAACTTCCGTAGCAGACATACAATACCAGACAAAAGTGACTACTTTGGTAGAGAGGGTCAAATCTGCTGTGCAGTGCTCCCACCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'13-17,'13-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGAAGAAGCTCATAGACA
R:
TGCACAGCAGATTTGACCCTC
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types