HsaINT0087330 @ hg19
Intron Retention
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139698954-139699268:+
Coord C1 exon
chr9:139698954-139699079
Coord A exon
chr9:139699080-139699213
Coord C2 exon
chr9:139699214-139699268
Length
134 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCGCCCCCACCTCCCATCAGGGC
3' ss Score
8.32
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAAGGGAGGCGTCCTTCATCGAGGAGCGCCGGGCAAGGGAGAACCGGCTCAACCAGCAGAAGAAGCTGATCGACAAGATCCACACGAAGGAGACCAGCGAGAAGTACCGCCGG
Seq A exon
GTAAGCCCCAGGCCAGGGCCTGGCTGGCTGCCCATCCCCATGACAGCTGGGTGGACACAGGCTCAGGGCCACCACTCAGGGCCCACTCCCTGCCAAGGATGTCTCATCCCTTCCCCGCCCCCACCTCCCATCAG
Seq C2 exon
GGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-KIAA1984:NM_001039374:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=NA C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATGAGGCAAAGGGAGG
R:
TTTCAGGGTCTCCGTGCTCAT
Band lengths:
179-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)