HsaINT0087330 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:136804502-136804816:+
Coord C1 exon
chr9:136804502-136804627
Coord A exon
chr9:136804628-136804761
Coord C2 exon
chr9:136804762-136804816
Length
134 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCGCCCCCACCTCCCATCAGGGC
3' ss Score
8.32
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAAGGGAGGCGTCCTTCATCGAGGAGCGCCGGGCAAGGGAGAACCGGCTCAACCAGCAGAAGAAGCTGATCGACAAGATCCACACGAAGGAGACCAGCGAGAAGTACCGCCGG
Seq A exon
GTAAGCCCCAGGCCAGGGCCTGGCTGGCTGCCCATCCCCATGACAGCTGGGTGGACACAGGCTCAGGGCCACCACTCAGGGCCCACTCCCTGCCAAGGATGTCTCATCCCTTCCCCGCCCCCACCTCCCATCAG
Seq C2 exon
GGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACGGAGACCCTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273066:ENST00000415992:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATGAGGCAAAGGGAGG
R:
TTTCAGGGTCTCCGTGCTCAT
Band lengths:
179-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development