BtaINT0081420 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000933 | KIAA1984
Description
Bos taurus KIAA1984 ortholog (KIAA1984), mRNA. [Source:RefSeq mRNA;Acc:NM_001035502]
Coordinates
chr11:106367060-106367338:-
Coord C1 exon
chr11:106367213-106367338
Coord A exon
chr11:106367115-106367212
Coord C2 exon
chr11:106367060-106367114
Length
98 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CTCCTCCTCCCTCTCTCCAGGGC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGAACATGAGGCAAGGGGAGGCCACCTTCATCGAGGAGCGCCGGGCACGAGAGAACCGGCTGAACCAGCAGAAGAAGCTGATCGACAAGATCCACACCAAGGAGACGAGCGAGAAGTACCGCCGG
Seq A exon
GTGAGCTGGCTCGTCTGGGCACTGCCCTTTGGGATGCCCAGCGCTCCTCAGCCCCGCAGAGGATGCCCCTCACCACACCTCCTCCTCCCTCTCTCCAG
Seq C2 exon
GGCCGGCGGGACTTGGACTTCCCCTCCAACCTGATGGGTCCAGAAACTCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000933:ENSBTAT00000042795:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.605
Domain overlap (PFAM):
C1:
PF053358=DUF745=PD(16.5=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACATGAGGCAAGGGGAG
R:
CAGAGTTTCTGGACCCATCAGG
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development