RnoINT0030827 @ rn6
Intron Retention
Gene
ENSRNOG00000017044 | Ccdc183
Description
coiled-coil domain containing 183 [Source:RGD Symbol;Acc:1560370]
Coordinates
chr3:2835633-2835910:-
Coord C1 exon
chr3:2835785-2835910
Coord A exon
chr3:2835688-2835784
Coord C2 exon
chr3:2835633-2835687
Length
97 bp
Sequences
Splice sites
5' ss Seq
CGTGTACAT
5' ss Score
-3.96
3' ss Seq
CTGGTTCTTTCTCCTCTCAGGGC
3' ss Score
11.34
Exon sequences
Seq C1 exon
AGGAACATGAGGCAAGGGGAGGCAACCTTTATCGAGGAGCGAAGAGCACGGGAGAACCGACTGAACCAGCAAAAGAAGCTTATTGACAAGATCCACACCAAGGAGACAAGCGAGAAGTACCGCCGT
Seq A exon
GTACATCTTGAGCCATGCCCCATGGCTCCCTCGCCCATGGGGGAGAGTTGGGAGGAGCCTTCCCTTCTTCTCCTCACCTGGTTCTTTCTCCTCTCAG
Seq C2 exon
GGCCGGAGGGACTTGGATTTCCCCTCCAATCTAATGAGTATGGAAAGCATGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017044:ENSRNOT00000061874:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF053358=DUF745=PD(14.5=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACATGAGGCAAGGGGAG
R:
TCCATACTCATTAGATTGGAGGGGA
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]