Special

MmuEX0028691 @ mm9

Exon Skipping

Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71291333-71344999:+
Coord C1 exon
chr2:71291333-71291455
Coord A exon
chr2:71338836-71338926
Coord C2 exon
chr2:71344842-71344999
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTTTCTACCCAGATG
3' ss Score
8.7
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTCAGCGCTTCTGGGCTTTGAGAGCGCGGCTACTCCAGTGGGCGGAGCTGCGAGGCTCTCTTGGCCACGTGACCGGAGCCAACATGGCGGCGCCCATCGGCGTCCCCCTGCTCGTCCGTGGAG
Seq A exon
ATGTTTGATCCTTCTGAAGGAAGCCCAAATGAGGACTGATGGCCTGCTGCTGCTGGGTGAAAGCCTGTTCTAGGAGTGTATAATGAGAAAT
Seq C2 exon
GTTGTCAGAGAATTCTGTCTTCGCCACTCAATCATATCTACTTACACAAGCGGTCAGGCAGTCAACAAAGAAGACATTTCTTTTTCTGGAGACAAAGGGATATCTCCCACAGTGTGGTTTCACCGGCTGCCGTCTCTCCCGCACATCCTGTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000048190f4299A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000048190f4301A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000048190, ENSMUSP00000048190f4300A, ENSMUSP00000048190f5860A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:172918525-172918614 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:24538364-24538455 
ALTERNATIVE
BtaEX0021196
(MAP1D)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr7:19271299-19271384 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTTTGAGAGCGCGGCTACTC

				
R: 
TCTTTGTTGACTGCCTGACCG

				
Band lengths: 
179-270

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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