BtaEX0021196 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24529732-24590687:-
Coord C1 exon
chr2:24590651-24590687
Coord A exon
chr2:24538364-24538455
Coord C2 exon
chr2:24529732-24529889
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTTTCTGCCCAGATA
3' ss Score
7.74
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCGGCGCCCAGCGGCTTGCACCTGTTCGTCCGAAGAG
Seq A exon
ATACTTGAAGCCTCTGAAACATCCCATAACTTCGAATTGATGGCACTGTGCAGGGTAAAAGTGCTGCCCTGGAAACGTACAATGAAACAGAG
Seq C2 exon
GTTGTCATAGGATTTTCTCGTCACCACTCAATCATATCTACTTACACACACAGTCAACCAGTCAACAAAGAAGAAATTTCTTTTTCCGGAGACAAAGAGAGATTTCCCACAATATAGTTTTGCCGGCTGCAGTTTCTTCAGCTCATCCAGTCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075_MULTIEX2-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACCTGTTCGTCCGAAG
R:
TTCGGGACTGGATGAGCTGAA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development