MmuEX0028691 @ mm10
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71453276-71506942:+
Coord C1 exon
chr2:71453276-71453398
Coord A exon
chr2:71500779-71500869
Coord C2 exon
chr2:71506785-71506942
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTTTCTACCCAGATG
3' ss Score
8.7
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
TTCAGCGCTTCTGGGCTTTGAGAGCGCGGCTACTCCAGTGGGCGGAGCTGCGAGGCTCTCTTGGCCACGTGACCGGAGCCAACATGGCGGCGCCCATCGGCGTCCCCCTGCTCGTCCGTGGAG
Seq A exon
ATGTTTGATCCTTCTGAAGGAAGCCCAAATGAGGACTGATGGCCTGCTGCTGCTGGGTGAAAGCCTGTTCTAGGAGTGTATAATGAGAAAT
Seq C2 exon
GTTGTCAGAGAATTCTGTCTTCGCCACTCAATCATATCTACTTACACAAGCGGTCAGGCAGTCAACAAAGAAGACATTTCTTTTTCTGGAGACAAAGGGATATCTCCCACAGTGTGGTTTCACCGGCTGCCGTCTCTCCCGCACATCCTGTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921_MULTIEX1-3/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGAGCGCGGCTACTC
R:
TCTTTGTTGACTGCCTGACCG
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types